Pinarbasi Degirmenci N, Sur-Erdem I, Akcay V, Bolukbasi Y, Solaroglu I, and Bagci-Onder T. “Chronically radiation exposed survivor glioblastoma cells display poor response to Chk1 inhibition”. bioRxiv, 2022.04.16.488495; doi: htt

ps://doi.org/10.1101/2022.04.16.488495

Bagci-Onder T*, Kutuk O, Chonghaile TN and Knippschild U. “Editorial: Cell Death and Targeted Cancer Therapies”, Frontiers in Cell and Developmental Biology. doi: 10.3389/fcell.2022.967720. *corresponding author

Yigci D, Sarabi MR, Ustun M, Atceken N, Sokullu E, Bagci-Onder T and Tasoglu S. “3D Bioprinted Glioma Models”. Progress in Biomedical Engineering,2022 doi: https://doi.org/10.1088/2516-1091/ac7833.

Zhang Y, Donaher JL, Das S, Li X, Reinhardt F, Krall JA, Lambert AW, Thiru P, Keys, HR, Khan M, Hofree M, Wilson MM, Yedier-Bayram O, Lack NA, Onder TT, Bagci-Onder T, Tyler M, Tirosh I, Regev A, Lees J and Weinberg RA. “Loss of PRC2 or KMT2D-COMPASS Generates Two Quasi-Mesenchymal Cell States with Distinct Metastatic Abilities”. Nature Cell Biology, 2022 Apr 11. doi: 10.1038/s41556-022-00877-0.

Seker-Polat F, Pinarbasi N, Solaroglu I and Bagci-Onder T*. “Tumor cell infiltration to the brain in glioblastoma: from mechanisms to clinical perspectives”. Cancers (Basel), 2022, 14(2), 443; https://doi.org/10.3390/cancers14020443. *corresponding author

Weber BZC, Agca S, Domaniku A, Bilgic SN, Arabaci DH, Kir S. Inhibition of epidermal growth factor receptor suppresses parathyroid hormone-related protein expression in tumours and ameliorates cancer-associated cachexia. J Cachexia Sarcopenia Muscle (2022) 13(3):1582-1594.

Van de Vondel L, De Winter J, Beijer D, Coarelli G, Wayand M, Palvadeau R, Pauly MG, Klein K, Rautenberg M, Guillot-Noël L, Deconinck T, Vural A, Ertan S, Dogu O, Uysal H, Brankovic V, Herzog R, Brice A, Durr A, Klebe S, Stock F, Bischoff AT, Rattay TW, Sobrido MJ, De Michele G, De Jonghe P, Klopstock T, Lohmann K, Zanni G, Santorelli FM, Timmerman V, Haack TB, Züchner S; PREPARE Consortium, Schüle R, Stevanin G, Synofzik M, Basak AN, Baets J. De Novo and Dominantly Inherited SPTAN1 Mutations Cause Spastic Paraplegia and Cerebellar Ataxia. Mov Disord. 2022 Feb 12. doi: 10.1002/mds.28959. Epub ahead of print. PMID: 35150594.

Onder H, Vural A, Duzkale N, Kocer B, Comoglu S. Illustration of a rare case of hereditary spastic paraplegia type 30 associated with a missense variant in the non-motor domain of KIF1A. J Neurol. 2022 Jan 9. doi: 10.1007/s00415-021-10924-9. Epub ahead of print. PMID: 34999958.

Avci,S, Kuscu,N, Durkut,B  Kilinc,L, Ustunel,I,  Celik- Ozenci, C. Altered expression of Notch signaling, Tlr receptors, and surfactant protein expression after prostaglandin inhibition may be associated with the delayed labor in LPS-induced mice. J Assist Reprod Genet. Published 2022 May 10. doi: 10.1007/s10815-022-02515-y.

Ucaryilmaz Metin C, Ozcan G. Comprehensive bioinformatic analysis reveals a cancer-associated fibroblast gene signature as a poor prognostic factor and potential therapeutic target in gastric cancer. BMC Cancer. 2022;22(1):692. Published 2022 Jun 23. doi:10.1186/s12885-022-09736-5

Ucaryilmaz Metin C, Ozcan G. The HIF-1α as a Potent Inducer of the Hallmarks in Gastric Cancer. Cancers (Basel). 2022;14(11):2711. Published 2022 May 30. doi:10.3390/cancers14112711

Köse B, Özkan M, Sur-Erdem İ, Çavdar S. Does astrocyte gap junction protein expression level differ during development in the absence epileptic rats? Synapse. 2022 Feb 8. doi: 10.1002/syn.22225. Online ahead of print. PMID: 35137459

Çavdar S, Güneş YC, Algın O. Connections of the Dentate Nucleus with the Amygdala: Experimental Rat and Human 3-Tesla Tractography Study. Brain Connect. 2022 Jun 23. doi: 10.1089/brain.2021.0179. Online ahead of print.PMID: 3558759

Çavdar S, Köse B, Özkan M, Sur Erdem İ. Comparison of astrocytes and gap junction proteins in the white matter of genetic absence epileptic and control rats: an experimental study. Neurol Res. 2022 Feb 13:1-11. doi: 10.1080/01616412.2022.2039527. Online ahead of print.PMID: 35156564

Reissig TM, Uhrig S, Jost PJ, Luchini C, Vicentini C, Liffers ST, Allgäuer M, Adsay V, Scarpa A, Lawlor RT, Fröhling S, Stenzinger A, Klöppel G, Schildhaus HU, Siveke JT. MCL1 as putative target in pancreatoblastoma. Virchows Arch.  2022 Jun 7. doi: 10.1007/s00428-022-03349-w. Online ahead of print. PMID: 35668118

Paolino G, Esposito I, Hong SM, Basturk O, Mattiolo P, Kaneko T, Veronese N, Scarpa A, Adsay V, Luchini C. Intraductal tubulopapillary neoplasm (ITPN) of the pancreas: a distinct entity among pancreatic tumors. Histopathology. 2022 May 18. doi: 10.1111/his.14698. Online ahead of print.

PMID: 35583805 Review

Mattiolo P, Mafficini A, Lawlor RT, Marchegiani G, Malleo G, Pea A, Salvia R, Piccoli P, Sciammarella C, Santonicco N, Parisi A, Silvestris N, Milella M, Adsay V, Scarpa A, Luchini C. “Pure” hepatoid tumors of the pancreas harboring CTNNB1 somatic mutations: a new entity among solid pseudopapillary neoplasms. Virchows Arch. 2022 Jul;481(1):41-47. doi: 10.1007/s00428-022-03317-4. Epub 2022 Mar 31. PMID: 35359182 Free PMC article.
Luchini C, Pantanowitz L, Adsay V, Asa SL, Antonini P, Girolami I, Veronese N, Nottegar A, Cingarlini S, Landoni L, Brosens LA, Verschuur AV, Mattiolo P, Pea A, Mafficini A, Milella M, Niazi MK, Gurcan MN, Eccher A, Cree IA, Scarpa A. Ki-67 assessment of pancreatic neuroendocrine neoplasms: Systematic review and meta-analysis of manual vs. digital pathology scoring. Mod Pathol. 2022 Jun;35(6):712-720. doi: 10.1038/s41379-022-01055-1. Epub 2022 Mar 5. PMID: 35249100 Free PMC article. Review.
	Vanoli A, Guerini C, Grillo F, Klersy C, Fassan M, Arpa G, Neri G, Luinetti O, Lenti MV, Ulivi P, Tedaldi G, Furlan D, Quaquarini E, Ardizzone S, Sampietro G, Biancone L, Monteleone G, Solcia E, Sessa F, Paulli M, Adsay NV, Di Sabatino A. Poorly Cohesive Carcinoma of the Nonampullary Small Intestine: A Distinct Histologic Subtype With Prognostic Significance. Am J Surg Pathol. 2022 Apr 1;46(4):498-508. doi: 10.1097/PAS.0000000000001821. PMID: 34628432

 

KIYGA, E. Adıgüzel, Z.  Uçar, E.Ö.  Temozolomide Increases Heat Shock Proteins in Extracellular Vesicles Released from Glioblastoma Cells Mol Biol Rep, 2022 Jun 25.

El –Beshtia, HS.  Gercek, Z. Kayi, H.  Yıldızhan, Y. Çetin, Y.  Adigüzel, Z. Özalp-Yaman, Ş. Anticancer Investigation of Platinum and Copper-Based Complexes Containing Clip-Quinoxaline Ligands. Journal of Molecular Structure, 2022 Feb 15.

Günes Günsel, G., Conlon, T., Jeridi, A., Kim, R., Ertüz, Z., Lang, N., Ansari, M., Novikova, M., Jiang, D., Strunz, M., Gaianova, M., Hollauer, C., Gabriel, C., Angelidis, I., Doll, S., Pestoni, J., Edelmann, S., Kohlhepp, M., Guillot, A., Bassler, K., Van Eeckhoutte, H., Kayalar, Ö., Konyalilar, N., Kanashova, T., Rodius, S., Ballester-López, C., Genes Robles, C., Smirnova, N., Rehberg, M., Agarwal, C., Krikki, I., Piavaux, B., Verleden, S., Vanaudenaerde, B., Königshoff, M., Dittmar, G., Bracke, K., Schultze, J., Watz, H., Eickelberg, O., Stoeger, T., Burgstaller, G., Tacke, F., Heissmeyer, V., Rinkevich, Y., Bayram, H., Schiller, H., Conrad, M., Schneider, R. and Yildirim, A., 2022. The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD. Nature Communications, 13(1).

Rajabi, H., Konyalilar, N., Erkan, S., Mortazavi, D., Korkunc, S., Kayalar, O., Bayram, H. and Rahbarghazi, R., 2022. Emerging role of exosomes in the pathology of chronic obstructive pulmonary diseases; destructive and therapeutic properties. Stem Cell Research & Therapy, 13(1).

Taşdemir Kahraman D, Karaküçükiyidoan A, Saygideger Y, Emre EE, Taşkın-Tok T, Başaran E, İlhan S, Saygideğer Demir B, Üren A and Bayram H. Discovery of new chiral sulfonamides bearing benzoxadiazole as HIF inhibitors for non-small cell lung cancer therapy: design, microwave-assisted synthesis, binding affinity, in vitro antitumoral activities and in silico studies. New J. Chem, 2022

Coskun,UC. Kus, F. Rehman, AU, Morova, B. Gulle, M. Baser, H. Kul, D. Kiraz, A. Baysal, K.  Erten, A. An Easy-to-Fabricate Microfluidic Shallow Trench Induced Three-Dimensional Cell Culturing and Imaging (STICI3D) Platform. ACS Omega 2022 7 (10), 8281-8293. https://doi.org/10.1021/acsomega.1c05118.

D Yigci, MR Sarabi, M Ustun, N Atceken, E Sokullu, TB Önder, S Tasoğlu, “3D Printed Glioma Models”, Progress in Biomedical Engineering, ISSN: 2516-1091 (2022)

B Ozdalgic, AK Yetisen, S Tasoglu, “3D-printed contact lenses: challenges towards translation and commercialization”, Journal of 3D printing in medicine, ISSN: 2059-4755 (2022)

MR Sarabi, AK Yetisen, S Tasoglu, “Magnetic Leviation for space exploration”, Trends in Biotechnology, ISSN: 0167-7799 (2022).

S Tasoglu. “Toilet-based continuous health monitoring using urine”, Nature Reviews Urology, 35064251 (2022).

F Rabbi, SR Dabbagh, P Angin, AK Yetisen, S Tasoglu, “Deep Learning-Enabled Technologies for Bioimage Analysis”, Micromachines, 13(2), 260 (2022).

Aydemir D, Ulusu NN. Phthalates: Environmental and Health Effects, Impact of the phthalates on the oxidative stress metabolism: a key mechanism contributes to the disease pathogenesis. Nova Science Publishers (2022).

Aydemir D, Ulusu NN. An old mobbing story and COVID-19. Journal of Basic and Clinical Health Sciences, 2022 (Accepted).

Anapali M, Kaya-Dagistanli F, Akdemir AS, Aydemir D, Ulusu NN, Ulutin T, Uysal O, Tanriverdi G, Ozturk M. Combined resveratrol and vitamin D treatment ameliorate inflammation-related liver fibrosis, ER stress, and apoptosis in a high-fructose diet/streptozotocin-induced T2DM model, 2022 Histochemistry and Cell Biology (Accepted).

Aydemir D, Eren I, Demirhan M, Ulusu NN. Evaluation of the Cell Behavior and Growth Characteristics of the Porcine Dermal Xenograft Patch in Relation to the Surface Properties. Front Bioeng Biotechnol. 2022 May 30;10:811446. doi: 10.3389/fbioe.2022.811446. PMID: 35706504; PMCID: PMC9189373.

Aydemir D, Malik AN, Kulac I, Basak AN, Lazoglu I, Ulusu NN. Impact of the Amyotrophic Lateral Sclerosis Disease on the Biomechanical Properties and Oxidative Stress Metabolism of the Lung Tissue Correlated With the Human Mutant SOD1G93A Protein Accumulation. Front Bioeng Biotechnol. 2022 Feb 25;10:810243. doi: 10.3389/fbioe.2022.810243.

Celebi G, Anapali M, Dagistanli FK, Akdemir AS, Aydemir D, Ulusu NN, Ulutin T, Komurcu-Bayrak E. Effect of vitamin D supplementation on OPG/RANKL signalling activities in endothelial tissue damage in diet-induced diabetic rat model. Pharmacol Rep. 2022 Feb;74(1):124-134. doi: 10.1007/s43440-021-00332-1.

Chen B, Guo M, Peker Y, Salord N, Drager LF, Lorenzi-Filho G, Tang X, Li Y. Effect of Continuous Positive Airway Pressure on Lipid Profiles in Obstructive Sleep Apnea: A Meta-Analysis. J Clin Med. 2022 Jan 25;11(3):596. doi: 10.3390/jcm11030596.

Celik Y, Balcan B, Peker Y**. CPAP Intervention as an Add-On Treatment to Lipid-Lowering Medication in Coronary Artery Disease Patients with Obstructive Sleep Apnea in the RICCADSA Trial. J Clin Med. 2022 Jan 5;11(1):273. doi: 10.3390/jcm11010273.

Peker Y, Franklin K, Hedner J. Coronary artery disease and sleep apnea. In: Kryger, Roth, Goldtstein, Dement WT (editors). Principals and practice of sleep medicine. 7th edition 2022. Elsevier Inc. Philadelphia, PA. 1453-1461.

Peker Y, Holtstrand-Hjälm H, Celik Y, Glantz H, Thunström E. Postoperative Atrial Fibrillation in Adults with Obstructive Sleep Apnea Undergoing Coronary Artery Bypass Grafting in the RICCADSA Cohort. J Clin Med 2022 Apr 27;11(9):2459. doi: 10.3390/jcm11092459.

Azarbarzin A, Zinchuk A, Wellman A, Labarca G, Vena D, Gell L, Messineo L, White DP, Gottlieb DJ, Redline S, Peker Y**, Sands SA. Cardiovascular Benefit of CPAP in Adults with Coronary Artery Disease and OSA without Excessive Sleepiness. Am J Respir Crit Care Med. 2022 May 17. doi: 10.1164/rccm.202111-2608OC. Online ahead of print.

Caliskan I, Bulus E, Afsar N, Altintas A. A Case With New-onset Neuromyelitis Optica Spectrum Disorder Following COVID-19 mRNA BNT162b2 Vaccination.

Neurologist. 2022 May 1;27(3):147-150. doi: 10.1097/NRL.0000000000000420.

Lu A, Zimmermann HG, Specovius S, Motamedi S, Chien C, Bereuter C, Lana-Peixoto MA, Fontenelle MA, Ashtari F, Kafieh R, Dehghani A, Pourazizi M, Pandit L, D’Cunha A, Kim HJ, Hyun JW, Jung SK, Leocani L, Pisa M, Radaelli M, Siritho S, May EF, Tongco C, De Sèze J, Senger T, Palace J, Roca-Fernández A, Leite MI, Sharma SM, Stiebel-Kalish H, Asgari N, Soelberg KK, Martinez-Lapiscina EH, Havla J, Mao-Draayer Y, Rimler Z, Reid A, Marignier R, Cobo-Calvo A, Altintas A, Tanriverdi U, Yildirim R, Aktas O, Ringelstein M, Albrecht P, Tavares IM, Bichuetti DB, Jacob A, Huda S, Soto de Castillo I, Petzold A, Green AJ, Yeaman MR, Smith TJ, Cook L, Paul F, Brandt AU, Oertel FC; GJCF International Clinical Consortium for NMOSD. Astrocytic outer retinal layer thinning is not a feature in AQP4-IgG seropositive neuromyelitis optica spectrum disorders. J Neurol Neurosurg Psychiatry. 2022 Feb;93(2):188-195. doi: 10.1136/jnnp-2021-327412. Epub 2021 Oct 28.

PMID: 34711650

Sen S, Tuncer A, Ozakbas S, Uzunkopru C, Baba C, Demir S, Beckmann Y, Gumus H, Arslan G, Kilic AK, Altintas A, Yuceyar N, Turan OF, Tutuncu M, Terzi M, Acar P, Bunul SD, Balci BP, Bir LS, Koseoglu M, Mungan S, Gunduz T, Dogan IG, Kotan D, Uygunoglu U, Ekmekci O, Demirkiran M, Kamisli O, Kabay SC, Tamam Y, Omerhoca S, Sevim S, Guler S, Kurtuncu M, Efendi H, Karabudak R, Siva A.

The Turkish experience of COVID-19 infection in people with NMOSD and MOGAD: A milder course?

Mult Scler Relat Disord. 2022 Feb; 58:103399. doi: 10.1016/j.msard.2021.103399. Epub 2021 Nov 19.

PMID: 35216782

In response to: why double ovarian stimulation in an in vitro fertilization cycle is potentially unsafe?

Oktem O.Hum Reprod. 2022 Jun 7:deac127. doi: 10.1093/humrep/deac127.

Cholesterol uptake or trafficking, steroid biosynthesis, and gonadotropin responsiveness are defective in young poor responders.

Bildik G, Esmaeilian Y, Hela F, Akin N, İltumur E, Yusufoglu S, Yildiz CS, Yakin K, Oktem O.Fertil Steril. 2022 May;117(5):1069-1080. doi: 10.1016/j.fertnstert.2022.01.024. Epub 2022 Mar 12.

Aytaç P, Sahin ID, Atalay RÇ, Tozkoparan B. Design, Synthesis, and Biological Evaluation of Novel Triazolothiadiazoles Derived From NSAIDs as Anticancer Agents. Anti-Cancer Agents in Medicinal Chemistry. 2021 Jun 22. doi: 10.2174/1871520621666210623093550. PMID: 34165413.

Jönsson J-M, Bååth M, Björnheden I, Sahin ID, Måsbäck A, Hedenfalk I. Homologous Recombination Repair Mechanisms in Serous Endometrial Cancer. Cancers. 2021; 13(2):254.

Kayabolen A, Akcan U, Ozturan D, Sarayloo E, Nurtop E, Ozer B, Sahin GN, Dogan O, Lack NA, Kaya M, Albayrak C, Can F, Solaroglu I and Bagci-Onder T. “Protein scaffold-based multimerization of soluble ACE2 efficiently blocks SARS-CoV-2 infection in vitro”. bioRxiv 2021.01.04.425128; doi: https://doi.org/10.1101/2021.01.04.425128

Yedier-Bayram O, Gökbayrak B, Aksu AC, Cavga AD, Kayabolen A, Kala EY, Karabiyik G, Günsay R, Morova T, Uyulur F, Lack, NA, Onder TT and Bagci-Onder T. ‘’EPIKOL, a chromatin-focused CRISPR/Cas9 library identifies cancer-specific epigenetic vulnerabilities’’. bioRxiv, 2021 doi: https://doi.org/10.1101/2021.05.14.444239.

Dogan N, Bozuyuk U, Erkoc P, Karacakol AC, Cingöz A, Seker-Polat F, Nazeer MA, Sitti M, Bagci-Onder T and Kizilel S. “Parameters Influencing the Transfection Efficiency of PEGylated Chitosan Nanoparticles: Experimental and Modeling Approach”. Advanced Nanobiomed Res, 2021, DOI: 10.1002/anbr.202100033.

Durdagi S, Avsar T, Orhan MD, Serhatli M, Balcioglu BK, Ozturk HU, Kayabolen A, Cetin Y, Aydinlik S, Bagci-Onder T, Tekin S, Demirci H, Guzel M, Akdemir A, Calis S, Oktay L, Tolu I, Butun YE, Erdemoglu E, Olkan A, Tokay N, Işık S, Ozcan A, Acar E, Buyukkilic S and Yumak Y. “The neutralization effect of Montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies”. Molecular Therapy, 2021 Oct 19:S1525-0016(21)00521-9. doi: 10.1016/j.ymthe.2021.10.014.

Ozyerli-Goknar E and Bagci-Onder T*. “Epigenetic regulation of apoptosis in cancers”. Cancers (Basel). 2021 Jun 27;13(13):3210. doi: 10.3390/cancers13133210. *corresponding author

Kayabolen A, Yilmaz E and Bagci-Onder T*. “IDH mutations in glioma, double edged sword in clinical applications?” Biomedicines, 2021 Jul 10;9(7):799. doi: 10.3390/biomedicines9070799. *corresponding author

Ustun M, Dabbagh SR, Ilci IS, Bagci-Onder T and Tasoglu S. “Glioma-on-a-Chip models”. Micromachines, 2021, 12 (5)490; https://doi.org/10.3390/mi12050490.

Cingöz A, Ozyerli-Goknar E, Morova T, Seker F, Selman ME, Gümüş ZH, Bhere D, Shah K, Solaroglu I and Bagci-Onder T*. “Generation of TRAIL-resistant cell line models reveals distinct adaptive mechanisms for acquired resistance and re-sensitization”. Oncogene, 2021 Mar 25. doi: 10.1038/s41388-021-01697-6. *corresponding author

Vural A, Şimşir G, Tekgül Ş, Koçoğlu C, Akçimen F, Kartal E, Şen NE, Lahut S, Ömür Ö, Saner N, Gül T, Bayraktar E, Palvadeau R, Tunca C, Pirkevi Çetinkaya C, Gündoğdu Eken A, Şahbaz I, Kovancılar Koç M, Öztop Çakmak Ö, Hanağası H, Bilgiç B, Eraksoy M, Gündüz A, Apaydın H, Kızıltan G, Özekmekçi S, Siva A, Altıntaş A, Kaya Güleç ZE, Parman Y, Oflazer P, Deymeer F, Durmuş H, Şahin E, Çakar A, Tüfekçioğlu Z, Tektürk P, Çorbalı MO, Tireli H, Akdal G, Yiş U, Hız S, Şengün İ, Bora E, Serdaroğlu G, Erer Özbek S, Ağan K, İnce Günal D, Us Ö, Kurt SG, Aksoy D, Bora Tokçaer A, Elmas M, Gültekin M, Kumandaş S, Acer H, Kaya Özçora GD, Yayla V, Soysal A, Genç G, Güllüoğlu H, Kotan D, Özözen Ayas Z, Şahin HA, Tan E, Topçu M, Topçuoğlu ES, Akbostancı C, Koç F, Ertan S, Elibol B, Başak AN. The Complex Genetic Landscape of Hereditary Ataxias in Turkey and Implications in Clinical Practice. Mov Disord. 2021 Jul;36(7):1676-1688. doi: 10.1002/mds.28518. Epub 2021 Feb 24. PMID: 33624863.

Macrini C, Gerhards R, Winklmeier S, Bergmann L, Mader S, Spadaro M, Vural A, Smolle M, Hohlfeld R, Kümpfel T, Lichtenthaler SF, Franquelim HG, Jenne D, Meinl E. Features of MOG required for recognition by patients with MOG antibody-associated disorders. Brain. 2021 Mar 11:awab105. doi: 10.1093/brain/awab105. Epub ahead of print. PMID: 33704436.

Inan B, Gocmen R, Vural A, Colpak AI, Meinl E, Karabudak R, Tuncer A. Myelin oligodendrocyte glycoprotein antibody associated central nervous system demyelinating disease: a tertiary center experience from Turkey. Mult Scler Relat Disord. 2020 Sep;44:102376. doi: 10.1016/j.msard.2020.102376. Epub 2020 Jul 4. Erratum in: Mult Scler Relat Disord. 2021 Feb;48:102581. PMID: 32674059.

Çavdar S, Köse B, Sur-Erdem İ, Özkan M. Comparing astrocytic gap junction of genetic absence epileptic rats with control rats: an experimental study.Brain Struct Funct. 2021 Jun 7. doi: 10.1007/s00429-021-02310-y.

Özkan M, Köse B, Algın O, Oğuz S, Erden ME, Çavdar S. Non-motor connections of the pedunculopontine nucleus of the rat and human brain. Neurosci Lett. 2021 Oct 29:136308. doi: 10.1016/j.neulet.2021.

Taskin OC, Reid MD, Bagci P, Balci S, Armutlu A, Demirtas D, Pehlivanoglu B, Saka B, Memis B, Bozkurtlar E, Leblebici CB, Birceanu A, Xue Y, Erkan M, Kapran Y, Baygul A, Sokmensuer C, Scarpa A, Luchini C, Basturk O, Adsay V. Infiltration pattern predicts metastasis and progression better than the T-stage and grade in pancreatic neuroendocrine tumors: a proposal for a novel infiltration-based morphologic grading. Mod Pathol. 2022 Jun;35(6):777-785. doi: 10.1038/s41379-021-00995-4. Epub 2021 Dec 30. PMID: 34969955

Wang H, Chetty R, Hosseini M, Allende DS, Esposito I, Matsuda Y, Deshpande V, Shi J, Dhall D, Jang KT, Kim GE, Luchini C, Graham RP, Reid MD, Basturk O, Hruban RH, Krasinskas A, Klimstra DS, Adsay V. Pathologic Examination of Pancreatic Specimens Resected for Treated Pancreatic Ductal Adenocarcinoma: Recommendations From the Pancreatobiliary Pathology Society. Am J Surg Pathol. 2022 Jun 1;46(6):754-764. doi: 10.1097/PAS.0000000000001853. Epub 2021 Dec 15. PMID: 34889852

Lawlor RT, Mafficini A, Sciammarella C, Cantù C, Rusev BC, Piredda ML, Antonello D, Grimaldi S, Bonizzato G, Sperandio N, Marchegiani G, Malleo G, Pea A, Salvia R, Mombello A, Mazzoleni G, Nottegar A, Hanspeter E, Riva G, Tomezzoli A, Bencivenga M, de Manzoni G, Pedron S, Paolino G, Mattiolo P, Brosens LA, Silvestris N, Fassan M, Cooke SL, Beer PA, Milella M, Adsay VN, Cheng L, Scarpa A, Luchini C. Genomic characterization of hepatoid tumors: context matters. Hum Pathol. 2021 Dec;118:30-41. doi: 10.1016/j.humpath.2021.09.006. Epub 2021 Sep 22. PMID: 34562502

 

Muraki T, Jang KT, Reid MD, Pehlivanoglu B, Memis B, Basturk O, Mittal P, Kooby D, Maithel SK, Sarmiento JM, Christians K, Tsai S, Evans D, Adsay V. Pancreatic ductal adenocarcinomas associated with intraductal papillary mucinous neoplasms (IPMNs) versus pseudo-IPMNs: relative frequency, clinicopathologic characteristics and differential diagnosis. Mod Pathol. 2022 Jan;35(1):96-105. doi: 10.1038/s41379-021-00902-x. Epub 2021 Sep 13. PMID: 34518632

Kearney JF, Adsay V, Yeh JJ. Pathology and Molecular Characteristics of Pancreatic Cancer. Surg Oncol Clin N Am. 2021 Oct;30(4):609-619. doi: 10.1016/j.soc.2021.06.003. Epub 2021 Jul 22. PMID: 34511185 Review.

Dhall D, Shi J, Allende DS, Jang KT, Basturk O, Adsay V, Kim GE. Towards a More Standardized Approach to Pathologic Reporting of Pancreatoduodenectomy Specimens for Pancreatic Ductal Adenocarcinoma: Cross-continental and Cross-specialty Survey From the Pancreatobiliary Pathology Society Grossing Working Group. Am J Surg Pathol. 2021 Oct 1;45(10):1364-1373. doi: 10.1097/PAS.0000000000001723. PMID: 33899790

Roa JC, Basturk O, Adsay V. Dysplasia and carcinoma of the gallbladder: pathological evaluation, sampling, differential diagnosis and clinical implications. Histopathology. 2021 Jul;79(1):2-19. doi: 10.1111/his.14360. Epub 2021 May 6. PMID: 33629395 Review.

Asa SL, La Rosa S, Basturk O, Adsay V, Minnetti M, Grossman AB. Molecular Pathology of Well-Differentiated Gastro-entero-pancreatic Neuroendocrine Tumors. Endocr Pathol. 2021 Mar;32(1):169-191. doi: 10.1007/s12022-021-09662-5. Epub 2021 Jan 18. PMID: 33459926 Review.

DeSimone MS, Goodman M, Pehlivanoglu B, Memis B, Balci S, Roa JC, Jang KT, Jang JY, Hong SM, Lee K, Kim H, Choi HJ, Muraki T, Araya JC, Bellolio E, Sarmiento JM, Maithel SK, Losada HF, Basturk O, Reid MD, Koshiol J, Adsay V. T2 gallbladder cancer shows substantial survival variation between continents and this is not due to histopathologic criteria or pathologic sampling differences. Virchows Arch. 2021 May;478(5):875-884. doi: 10.1007/s00428-020-02968-5. Epub 2021 Jan 7. PMID: 33411027

Nunes,P.  Yildizhan, Y. Adiguzel, Z. Marques, F.  Pessoa, JC.  Acilan-Ayhan, C. Correia, I.  Copper (II) and oxidovanadium (IV) complexes of chromone Schiff bases as potential anticancer agents. Journal of Biological Inorganic Chemistry, 2021 Nov 24, 27,89–109 (2022).

Kayalar Ö, Arı A, Babuççu G, Konyalılar N, Doğan Ö, Can F, Şahin ÜA, Gaga EO, Kuzu SL, Arı PE, Odabası M, Taşdemir Y, Cindoruk SS, Esen F, Sakın E, Çalışkan B, Tecer LH, Fıçıcı M, Altın A, Onat B, Ayvaz C, Uzun B, Saral A, Döğeroğlu T, Malkoç S, Üzmez ÖÖ, Kunt F, Aydın S, Kara M, Yaman B, Doğan G, Olgun B, Dokumacı EN, Güllü G, Uzunpınar ES, Bayram H. Existence of SARS-CoV-2 RNA on ambient particulate matter samples: A nationwide study in Turkey. Sci Total Environ 2021; 789: 147976.

Kokturk N, Babayigit C, Kul S, Cetinkaya PD, Nayci SA, Baris SA, Karcioglu O, Aysert P, Irmak I, Yuksel AA, Sekibag Y, Toprak OB, Azak E, Mulamahmutoglu S, Cuhadaroglu C, Demirel A, Kerget B, Ketencioglu BB, Ozger HS, Ozkan G, Ture Z, Ergan B, Oguz VA, Kilinc O, Ercelik M, Ciftci TU, Alici O, Temel EN, Ataoglu O, Aydin A, Bahcetepe DC, Gullu YT, Fakili F, Deveci F, Kose N, Tor MM, Gunluoglu G, Altin S, Turgut T, Tuna T, Ozturk O, Dikensoy O, Gulhan PY, Basyigit I, Boyaci H, Oguzulgen IK, Borekci S, Gemicioglu B, Bayraktar F, Elbek O, Hanta I, Okur HK, Sagcan G, Uzun O, Akgun M, Altinisik G, Dursun B, Edis EC, Gulhan E,

Eyuboglu FO, Gultekin O, Havlucu Y, Ozkan M, Coskun AS, Sayiner A, Kalyoncu AF, Itil O, Bayram H. The predictors of COVID-19 mortality in a nationwide cohort of Turkish patients. Respiratory Medicine 2021; Jul; 183:106433.

Musellim B, Kul S, Ay P, Uyanusta Küçük FÇ, Dağlı E, Itil O, Bayram H. Excess Mortality During COVID-19 Pandemic in İstanbul. Turk Thorac J 2021; 22: 137-41.

Marazioti A, Krontira AC, Behrend SJ, Giotopoulou GA, Ntaliarda G, Blanquart C, Bayram H, Iliopoulou M, Vreka M, Trassl L, Pepe MAA, Hackl CM, Klotz LV, Weiss SAI, Koch I, Lindner M, Hatz RA, Behr J, Wagner DE, Papadaki H, Antimisiaris SG, Jean D, Deshayes S, Grégoire M, Kayalar Ö, Mortazavi D, Dilege Ş, Tanju S, Erus S, Yavuz Ö, Bulutay P, Fırat P, Psallidas I, Spella M, Giopanou I, Lilis I, Lamort AS, Stathopoulos GT. KRAS signaling in malignant pleural mesothelioma. EMBO Mol Med 2021; 14: e13631.

Peker, Y., Celik, Y., Arbatli, S., Isik, S., Balcan, B., & Karataş, F. et al. Effect of High-Risk Obstructive Sleep Apnea on Clinical Outcomes in Adults with Coronavirus Disease 2019: A Multicenter, Prospective, Observational Clinical Trial. Annals of The American Thoracic Society 2021; 18(9), 1548-1559.

Alipoor SD, Mortaz E, Jamaati HR, Tabarsi P, Bayram H, Adcock IM. COVID-2019: Molecular and cellular response. Front Cell Infect Microbiol 2021, Feb 11;11: 563085.

MR Sarabi, N Jiang, E Ozturk, AK Yetisen, S Tasoglu “Devices and applications at the micro-and nanoscale”, Lab on a Chip, 21 (4), 627-640 (2021).

SR Dabbagh, MM Alseed, M Saadat, M Sitti, S Tasoglu, “Biomedical Applications of Magnetic Levitation”, Advanced NanoBiomed Research, 2100103 (2021).

S Balbach, N Jiang, R Moreddu, X Dong, W Kurz, C Wang, J Dong, Y Yin, H Butt, M Brischwein, O Hayden, M Jakobi, S Tasoglu, AW. Koch and AK Yetisen “Smartphone-based colorimetric detection system for portable health tracking” Analytical methods, 13, 4361-4369 (2021).

KP Deshmukh, S Rahmani Dabbagh, N Jiang, S Tasoglu*, AK Yetisen*. “Recent Technological Developments in the Diagnosis and Treatment of Cerebral Edema” Advanced NanoBiomed Research, 2100001 (2021).

N Jiang, S Flyax, W Kurz, M Jakobi, S Tasoglu, AW Koch, AK Yetisen. “Intracranial Sensors for Continuous Monitoring of Neurophysiology” Advanced Materials Technologies, 2100339 (2021).

MR Sarabi, B Bediz, LD Falo, E Korkmaz, S Tasoglu*. “3D printing of microneedle arrays: challenges towards clinical translation” Journal of 3D printing in medicine, 5 (2), 65 (2021).

MM Alseed, H Syed, MC Onbasli, AK Yetisen, S Tasoglu*. “Design and Adoption of Low-Cost Point-of-Care Diagnostic Devices: Syrian Case” Micromachines, 12 (8), 882 (2021).

M Temirel, B Yenilmez, S Tasoglu*. “Long-term cyclic use of a sample collector for toilet-based urine analysis” Scientific Reports 11 (1), 1-11 (2021).

M Temirel, SR Dabbagh, S Tasoglu* “Hemp-Based Microfluidics” Micromachines 12 (2), 182 (2021). 15.MR Sarabi, A Ahmadpour, AK Yetisen, S Tasoglu* “Finger-Actuated Microneedle Array for Sampling Body Fluids” Applied Sciences, 11(12), 5329 (2021).

M Temirel, C Hawxhurst, S Tasoglu*. “Shape Fidelity of 3D-Bioprinted Biodegradable Patches” Micromachines, 12 (2), 195 (2021).

N Jiang, ND Tansukawat, L Gonzalez-Macia, HC Ates, C Dincer, F Güder, S Tasoglu*, AK Yetisen*. “Low-Cost Optical Assays for Point-of-Care Diagnosis in Resource-Limited Settings” ACS sensors,  6, 6, 2108–2124 (2021).

MM Alseed, SR Dabbagh, P Zhao, O Ozcan, S Tasoglu* “Portable magnetic levitation technologies” Advanced Optical Technologies (2021).

M Ustun, S Rahmani Dabbagh, IS Ilci, T Bagci-Onder, S Tasoglu* “Glioma-on-a-Chip Models” Micromachines, 12 (5), 490 (2021).

Z Yu, N Jiang, S Kazarian, S Tasoglu*, AK Yetisen*. “Optical Sensors for Continuous Glucose Monitoring”. Progress in Biomedical Engineering, 3, 022004 (2021).

SR Dabbagh, E Becher, F Ghaderinezhad, H Havlucu, O Ozcan, M Ozkan, A. Yetisen, S Tasoglu*. “Increasing the Packing Density of Assays in Paper-Based Microfluidic Devices”. Biomicrofluidics, 15 (1), 011502 (2021).

AC Bilirgen, M Toker, S Odabas, A Yetisen, B Garipcan, S Tasoglu*. “Plant-Based Scaffolds in Tissue Engineering”. ACS Biomaterials Science & Engineering, 7, 3, 926–938 (2021).

B Ozdalgic, M Ustun, SR Dabbagh, BZ Haznedaroglu, A Kiraz, S Tasoglu*. “Microfluidics for Microalgal Biotechnology”. Biotechnology and Bioengineering, 118, 1545–1563. (2021).

MR Sarabi, N Jiang, E Ozturk, AK Yetisen, S Tasoglu*. “Biomedical optical fibers” Lab on a Chip, 21 (4), 627-640 (2021).

SR Dabbagh, MR Sarabi, R Rahbarghazi, E Sokullu, AK Yetisen, S Tasoglu*. “3D-Printed Microneedles in Biomedical Applications”. iScience, 102012 (2021).

Aydemir D, Ulusu NN. Correspondence: Importance of the validated serum biochemistry and hemogram parameters for rapid diagnosis and to prevent false negative results during COVID-19 pandemic. Biotechnol Appl Biochem. 2021 Apr;68(2):390-391. doi: 10.1002/bab.1936.

Aydemir D, Salman N, Karimzadehkhouei M, Alaca BE, Turan B, Ulusu NN. Evaluation of the Effects of Aging on the Aorta Stiffness in Relation with Mineral and Trace Element Levels: an Optimized Method via Custom-Built Stretcher Device. Biol Trace Elem Res. 2021 Jul;199(7):2644-2652. doi: 10.1007/s12011-020-02380-9.

Aydemir D, Ulusu NN. People with blood disorders can be more vulnerable during COVID-19 pandemic: A hypothesis paper. Transfus Apher Sci. 2021 Jun;60(3):103080. doi: 10.1016/j.transci.2021.103080.

Ozcan M, Aydemir D, Bacanlı M, Anlar HG, Ulusu NN, Aksoy Y. Protective Effects of Antioxidant Chlorophyllin in Chemically Induced Breast Cancer Model In vivo. Biol Trace Elem Res. 2021 Feb 24. doi: 10.1007/s12011-021-02585-6.

Aydemir D, Dağlıoğlu G, Candevir A, Kurtaran B, Bozdogan ST, Inal TC, Ulusu NN. COVID-19 may enhance risk of thrombosis and hemolysis in the G6PD deficient patients. Nucleosides Nucleotides Nucleic Acids. 2021;40(5):505-517. doi: 10.1080/15257770.2021.1897457.

Aydemir D, Dogru S, Alaca BE Ulusu NN. Impact of the surface modifications and cell culture techniques on the biomechanical properties of PDMS in relation to cell growth behavior. International Journal of Polymeric Materials and Polymeric Biomaterials 2021 International Journal of Polymeric Materials and Polymeric Biomaterials DOI: 10.1080/00914037.2021.1919670

Veje M, Studahl M, Thunström E, Stentoft E, Nolskog P, Celik Y, Peker Y**. Sleep architecture, obstructive sleep apnea and functional outcomes in adults with a history of Tick-borne encephalitis. PLoS One. 2021 Feb 8;16(2):e0246767. doi: 10.1371/journal.pone.0246767. eCollection 2021.

Kasai T, Peker Y. To Salt or Not to Salt? Is That a Question in Obstructive Sleep Apnea? (editorial). Ann Am Thorac Soc. 2021 Mar;18(3):424-425. doi: 10.1513/AnnalsATS.202011-1458ED.

Chen B, Drager LF, Peker Y, Vgontzas AN, Phillips CL, Hoyos CM, Salles GF, Guo M, Li Y. Effect of CPAP on Weight and Local Adiposity in Adults with Obstructive Sleep Apnea: A Meta-Analysis. Ann Am Thorac Soc. 2021 Oct;18(10):1717-1727. doi: 10.1513/AnnalsATS.202101-060OC.

Öztürk M, Boran P, Ersu R, Peker Y**. Possums-based parental education for infant sleep: cued care resulting in sustained breastfeeding. Eur J Pediatr. 2021 Jun;180(6):1769-1776. doi: 10.1007/s00431-021-03942-2. Epub 2021 Jan 28.

Peker Y, Ozaydin AN, Cetinkaya R, Kabadayi E, Karakucuk AG, Celik Y, McNicholas WT. Reliability of the Turkish version of the European Obstructive Sleep Apnea Screening (EUROSAS) questionnaire for drivers. Sleep Breath. 2021 Jun;25(2):907-913. doi: 10.1007/s11325-020-02201-2. Epub 2020 Oct 8.

McEvoy RD, Sánchez-de-la-Torre M, Peker Y, Anderson CS, Redline S, Barbe F. Randomized clinical trials of cardiovascular disease in obstructive sleep apnea: understanding and overcoming bias. SLEEP. 2021 Apr 9;44(4):zsab019. doi: 10.1093/sleep/zsab019.

Pépin JL, Georgiev O, Tiholov R, Attali V, Verbraecken J, Buyse B, Partinen M, Fietze I, Belev G, Dokic D, Tamisier R, Lévy P, Lecomte I, Lecomte JM, Schwartz JC, Dauvilliers Y; HAROSA I Study Group*. Pitolisant for Residual Excessive Daytime Sleepiness in OSA Patients Adhering to CPAP: A Randomized Trial. Chest. 2021 Apr;159(4):1598-1609 (*member of the investigative team cited in the appendix of the manuscript).

Pengo MF, Steier J, Parati G; ANDANTE collaborators*; Researchers Collaborating in the ANDANTE PROJECT. The ANDANTE Project: A Worldwide Individual Data Meta-Analysis of the Effect of Sleep Apnea Treatment on Blood Pressure. Arch Bronconeumol. 2021 May 10:S0300-2896(21)00149-6. doi: 10.1016/j.arbres.2021.05.002. Online ahead of print. (*member of the investigative team cited in the appendix of the manuscript).

Zinchuk AV, Chu JH, Liang J, Celik Y, Op de Beeck S, Redeker NS, Wellman A, Yaggi HK, Peker Y, Sands SA. Physiological Traits and Adherence to Therapy of Sleep Apnea in Individuals with Coronary Artery Disease. Am J Respir Crit Care Med. 2021 Sep 15;204(6):703-712. doi: 10.1164/rccm.202101-0055OC.

Celik Y, Yapici-Eser H, Balcan B, Peker Y**. Association of Excessive Daytime Sleepiness with the Zung Self-Rated Depression Subscales in Adults with Coronary Artery Disease and Obstructive Sleep Apnea. Diagnostics. 2021 Jun 28;11(7):1176. doi: 10.3390/diagnostics11071176.

Behboudi A, Thelander T, Yazici D, Celik Y, Yucel-Lindberg T, Thunström E, Peker Y. Association of TNF-α (-308G/A) Gene Polymorphism with Circulating TNF-α Levels and Excessive Daytime Sleepiness in Adults with Coronary Artery Disease and Concomitant Obstructive Sleep Apnea. J Clin Med. 2021 Jul 31;10(15):3413. doi: 10.3390/jcm10153413.

Peker Y, Celik Y, Arbatli S, Isik SR, Balcan B, Karataş F, Uzel FI, Tabak L, Çetin B, Baygül A, Öztürk AB, Altuğ E, İliaz S, Atasoy C, Kapmaz M, Yazici D, Bayram H, Durmaz Çetin B, Çağlayan B; OSACOVID-19 Study Collaborators. Effect of High-Risk Obstructive Sleep Apnea on Clinical Outcomes in Adults with Coronavirus Disease 2019: A Multicenter, Prospective, Observational Clinical Trial. Ann Am Thorac Soc 2021 Sept;18(9):1548-1559. doi: 10.1513/AnnalsATS.202011-1409OC.

Javaheri S, Peker Y, Yaggi HK, Bassetti CLA. Obstructive sleep apnea and stroke: The mechanisms, the randomized trials, and the road ahead. Sleep Med Rev. 2022 Feb;61:101568. doi: 10.1016/j.smrv.2021.101568. Epub 2021 Nov 17.

Vural A, Şimşir G, Tekgül Ş, Koçoğlu C, Akçimen F, Kartal E, Şen NE, Lahut S, Ömür Ö, Saner N, Gül T, Bayraktar E, Palvadeau R, Tunca C, Pirkevi Çetinkaya C, Gündoğdu Eken A, Şahbaz I, Kovancılar Koç M, Öztop Çakmak Ö, Hanağası H, Bilgiç B, Eraksoy M, Gündüz A, Apaydın H, Kızıltan G, Özekmekçi S, Siva A, Altıntaş A, Kaya Güleç ZE, Parman Y, Oflazer P, Deymeer F, Durmuş H, Şahin E, Çakar A, Tüfekçioğlu Z, Tektürk P, Çorbalı MO, Tireli H, Akdal G, Yiş U, Hız S, Şengün İ, Bora E, Serdaroğlu G, Erer Özbek S, Ağan K, İnce Günal D, Us Ö, Kurt SG, Aksoy D, Bora Tokçaer A, Elmas M, Gültekin M, Kumandaş S, Acer H, Kaya Özçora GD, Yayla V, Soysal A, Genç G, Güllüoğlu H, Kotan D, Özözen Ayas Z, Şahin HA, Tan E, Topçu M, Topçuoğlu ES, Akbostancı C, Koç F, Ertan S, Elibol B, Başak AN. The complex genetic landscape of hereditary ataxias in Turkey and implications in clinical practice. Mov Disord. 2021 Feb 24. doi: 10.1002/mds.28518. Online ahead of print.PMID: 33624863

Altıntaş A, Yildiz-Tas A, Yilmaz S, Bayraktutar BN, Comert MC, Zimmermann H, Brandt AU, Paul F, Sahin A. A novel investigation method for axonal damage in neuromyelitis optica spectrum disorder: In vivo corneal confocal microscopy.

Mult Scler J Exp Transl Clin. 2021 Mar 19;7(1):2055217321998060. doi: 10.1177/2055217321998060. eCollection 2021 Jan-Mar.PMID: 33796330

Yeh WZ, Widyastuti PA, Van der Walt A, Stankovich J, Havrdova E, Horakova D, Vodehnalova K, Ozakbas S, Eichau S, Duquette P, Kalincik T, Patti F, Boz C, Terzi M, Yamout BI, Lechner-Scott J, Sola P, Skibina OG, Barnett M, Onofrj M, Sá MJ, McCombe PA, Grammond P, Ampapa R, Grand’Maison F, Bergamaschi R, Spitaleri DLA, Van Pesch V, Cartechini E, Hodgkinson S, Soysal A, Saiz A, Gresle M, Uher T, Maimone D, Turkoglu R, Hupperts RM, Amato MP, Granella F, Oreja-Guevara C, Altintas A, Macdonell RA, Castillo-Trivino T, Butzkueven H, Alroughani R, Jokubaitis VG; MSBase Study Group. Natalizumab, Fingolimod and Dimethyl Fumarate Use and Pregnancy-Related Relapse and Disability in Women With Multiple Sclerosis. Neurology. 2021 Apr 20:10. 1212/WNL.0000000000012084. doi: 10.1212/WNL.0000000000012084. Online ahead of print.PMID: 33879599

Jokubaitis VG, Skibina O, Alroughani R, Altintas A, Butzkueven H, Eichau S, Fragoso Y, Hellwig K, Hughes SE, Rath L, van der Walt A, Gray O. The MSBase pregnancy, neonatal outcomes, and women’s health registry. Ther Adv Neurol Disord. 2021 Apr 12;14:17562864211009104. doi: 10.1177/17562864211009104. eCollection 2021.PMID: 33912245

Moradi N, Sharmin S, Malpas C, Ozakbas S, Shaygannejad V, Terzi M, Boz C, Yamout B, Turkoglu R, Karabudak R, Hamdy S, Soysal A, Altıntaş A, Inshasi J, Al-Harbi T, Alroughani R, Kalincik T; MSBase Study Group. Utilization of Multiple Sclerosis therapies in the Middle East over a decade: 2009-2018. CNS Drugs. 2021 Jun 23. doi: 10.1007/s40263-021-00833-w. Online ahead of print.PMID: 34164782

Altintas A, Ersen-Danyeli A, Bozkurt SB, Uysal SP, Akpek S, Aygun MS, Akay OM, Kahyaoglu B, Peker S, Ure UB, Ferhanoglu B. A 52-Year-Old Man With Progressive Weakness and Incontinence. The Neurohospitalist. August 13, 2021.

https://doi.org/10.1177/19418744211039586

Barnett M, Bergsland N, Weinstock-Guttman B, Butzkueven H, Kalincik T, Desmond P, Gaillard F, van Pesch V, Ozakbas S, Rojas JI, Boz C, Altintas A, Wang C, Dwyer MG, Yang S, Jakimovski D, Kyle K, Ramasamy DP, Zivadinov R. Brain atrophy and lesion burden are associated with disability progression in a multiple sclerosis real-world dataset using only T2-FLAIR: The NeuroSTREAM MSBase study. Neuroimage Clin. 2021 Aug 24;32:102802. doi: 10.1016/j.nicl.2021.102802. Epub ahead of print. PMID: 34469848; PMCID: PMC8408519.

Oertel FC, Specovius S, Zimmermann HG, Chien C, Motamedi S, Bereuter C, Cook L, Lana Peixoto MA, Fontanelle MA, Kim HJ, Hyun JW, Palace J, Roca-Fernandez A, Leite MI, Sharma S, Ashtari F, Kafieh R, Dehghani A, Pourazizi M, Pandit L, D’Cunha A, Aktas O, Ringelstein M, Albrecht P, May E, Tongco C, Leocani L, Pisa M, Radaelli M, Martinez-Lapiscina EH, Stiebel-Kalish H, Siritho S, de Seze J, Senger T, Havla J, Marignier R, Calvo AC, Bichuetti D, Tavares IM, Asgari N, Soelberg K, Altintas A, Yildirim R, Tanriverdi U, Jacob A, Huda S, Rimler Z, Reid A, Mao-Draayer Y, Soto de Castillo I, Petzold A, Green AJ, Yeaman MR, Smith T, Brandt AU, Paul F. Retinal Optical Coherence Tomography in Neuromyelitis Optica. Neurol Neuroimmunol Neuroinflamm. 2021 Sep 15;8(6):e1068. doi: 10.1212/NXI.0000000000001068. PMID: 34526385; PMCID: PMC8448522.

S Vural, K Kerl, P E Doğan, S Vollmer, U Puchta, M He, Y Arakawa, A O Heper , A Karal , D Hartmann, A Boyvat, J C Prinz, A Arakawa, Lesional activation of T c 17 cells in Behçet’s disease and psoriasis supports HLA-class I-mediated autoimmune responses, Br J Dermatol. 2021 Dec;185(6):1209-1220. doi: 10.1111/bjd.20643. Epub 2021 Sep 20. PMID: 34254298.

Vural S, Baumgartner m, Lichtner P, Eckstein G, Hariry H, Chen W, Ruzicka T, Melnik B, Plewig G, Wagner M, Giehl KA, Investigation of Gamma Secretase Gene Complex Mutations in German Population with Hidradenitis Suppurativa Designates a Complex Polygenic Heritage, J Eur Acad Dermatol Venereol, 2021 Feb 8. doi:10.1111/jdv.17163.

Sahin, I.D., Christodoulou, M.S., Guzelcan, E.A. et al. A small library of chalcones induce liver cancer cell death through Akt phosphorylation inhibition. Scientific Reports. 10, 11814, 2020. DOI: 10.1038/s41598-020-68775-9

Kayabolen A, Sahin GN, Seker-Polat F, Cingoz A, Isik B, Acar S, Wakimoto H, Cahill DP, Solaroglu I, Cribbs A, Oppermann U and Bagci-Onder T. “Combined inhibition of KDM6A/B and HDACs exacerbates integrated stress response and mediates therapeutic effects in IDH1-mutant glioma”. bioRxiv, 2020.11.26.400234; doi: https://doi.org/10.1101/2020/11/26/400234

Durdagi S, Avsar T, Orhan MD, Serhatli M, Balcioglu BK, Ozturk HU, Kayabolen A, Cetin Y, Aydinlik S, Bagci-Onder T, Tekin S, Demirci H, Guzel M, Akdemir A, Calis S, Oktay L, Tolu I, Butun YE, Erdemoglu E, Olkan A, Tokay N, Işık S, Ozcan A, Acar E, Buyukkilic S and Yumak Y. “The neutralization effect of Montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies”. bioRxiv, 2020.12.26.424.423; doi: https://doi.org/10.1101/2020.12.26.424423

Senbabaoglu F, Aksu AC, Cingoz A, Seker-Polat F, Borklu-Yucel E, Solaroglu I and Bagci-Onder T*. “Drug Repositioning Screen on a New Primary Cell Line Identifies Potent Therapeutics for Glioblastoma”. Front Neurosci. 2020 Dec 17;14:578316. doi: 10.3389/fnins.2020.578316. *corresponding author

Sur-Erdem I*, Muslu K, Pınarbası N, Altunbek M, Seker-Polat F, Cingöz A, Aydın SO, Kahraman M, Culha M, Solaroglu I and Bagci-Onder T*. “TRAIL-conjugated silver nanoparticles sensitize glioblastoma cells to TRAIL by regulating CHK1 in the DNA repair pathway”. Neurol Res. 2020 Jul 25:1-9. doi: 10.1080/01616412.2020. *corresponding author

Almammadov T, Atakan G, Leylek O, Ozcan G, Gunbas G, Kolemen S. Resorufin Enters the Photodynamic Therapy Arena: A Monoamine Oxidase Activatable Agent for Selective Cytotoxicity. ACS Med Chem Lett. 2020;11(12):2491-2496. Published 2020 Nov 23. doi:10.1021/acsmedchemlett.0c00484

Çavdar S, Esen Aydın A, Algin O, Aydoğmuş E. Fiber dissection and 3-tesla diffusion tensor tractography of the superior cerebellar peduncle in the human brain: emphasize on the cerebello-hypthalamic fibers. Brain Struct Funct. 2020 Jan;225(1):121-128.

Çavdar S, Esen Aydın A, Algin O, Aydoğmuş E. Fiber dissection and 3-tesla diffusion tensor tractography of the superior cerebellar peduncle in the human brain: emphasize on the cerebello-hypthalamic fibers. Brain Struct Funct. 2020 Jan;225(1):121-128.

 

	Muraki T, Pehlivanoglu B, Memis B, Reid MD, Uehara T, Basturk O, Pernicka JG, Klimstra DS, Jarnagin WR, Ito T, Hasebe O, Okaniwa S, Horigome N, Hisa T, Mittal P, Sarmiento JM, Maithel SK, Koshiol J, Tsai S, Evans D, Erkan M, Adsay V. Pancreatobiliary Maljunction-Associated Gallbladder Cancer is as Common in the West, Shows Distinct Clinicopathologic Characteristics and Offers an Invaluable Model for Anatomy-Induced Reflux-Associated Physio-Chemical Carcinogenesis. Ann Surg. 2020 Nov 12. doi: 10.1097/SLA.0000000000004482. Online ahead of print. PMID: 3320112
	Rowan DJ, Pehlivanoglu B, Memis B, Bagci P, Erbarut I, Dursun N, Jang KT, Sarmiento J, Mucientes F, Cheng JD, Roa JC, Araya JC, Bellolio E, Losada H, Jang JY, Koshiol J, Reid MD, Basturk O, Adsay V. Mural Intracholecystic Neoplasms Arising in Adenomyomatous Nodules of the Gallbladder: An Analysis of 19 Examples of a Clinicopathologically Distinct Entity. Am J Surg Pathol. 2020 Dec;44(12):1649-1657. doi: 10.1097/PAS.0000000000001603.PMID: 33060404 Free PMC article.
	Janssen BV, Tutucu F, van Roessel S, Adsay V, Basturk O, Campbell F, Doglioni C, Esposito I, Feakins R, Fukushima N, Gill AJ, Hruban RH, Kaplan J, Koerkamp BG, Hong SM, Krasinskas A, Luchini C, Offerhaus J, Sarasqueta AF, Shi C, Singhi A, Stoop TF, Soer EC, Thompson E, van Tienhoven G, Velthuysen MF, Wilmink JW, Besselink MG, Brosens LAA, Wang H, Verbeke CS, Verheij J. Amsterdam International Consensus Meeting: tumor response scoring in the pathology assessment of resected pancreatic cancer after neoadjuvant therapy. International Study Group of Pancreatic Pathologists (ISGPP). Mod Pathol. 2021 Jan;34(1):4-12. doi: 10.1038/s41379-020-00683-9. Epub 2020 Oct 12. PMID: 33041332
	Taskin OC, Basturk O, Reid MD, Dursun N, Bagci P, Saka B, Balci S, Memis B, Bellolio E, Araya JC, Roa JC, Tapia O, Losada H, Sarmiento J, Jang KT, Jang JY, Pehlivanoglu B, Erkan M, Adsay V. Gallbladder polyps: Correlation of size and clinicopathologic characteristics based on updated definitions. PLoS One. 2020 Sep 11;15(9):e0237979. doi: 10.1371/journal.pone.0237979. eCollection 2020. PMID: 32915805 Free PMC article.
	Xue Y, Balci S, Aydin Mericoz C, Taskin OC, Jiang H, Pehlivanoglu B, Muraki T, Memis B, Saka B, Kim GE, Bandopadhyay S, Knight J, El-Rayes BF, Sarmiento J, Reid MD, Erkan M, Basturk O, Adsay V. Frequency and clinicopathologic associations of DNA mismatch repair protein deficiency in ampullary carcinoma: Routine testing is indicated. Cancer. 2020 Nov 1;126(21):4788-4799. doi: 10.1002/cncr.33135. Epub 2020 Aug 28.PMID: 32857459
	Pehlivanoglu B, Balci S, Basturk O, Bagci P, Erbarut Seven I, Memis B, Dursun N, Jang KT, Saka B, Ohike N, Tajiri T, Roa JC, Sarmiento JM, Reid MD, Adsay V. Intracholecystic tubular non-mucinous neoplasm (ICTN) of the gallbladder: a clinicopathologically distinct, invasion-resistant entity. Virchows Arch. 2021 Mar;478(3):435-447. doi: 10.1007/s00428-020-02877-7. Epub 2020 Jul 20. PMID: 32691142
	Xue Y, Reid MD, Pehlivanoglu B, Obeng RC, Jiang H, Memis B, Lui SK, Sarmiento J, Kooby D, Maithel SK, El-Rayes B, Basturk O, Adsay V. Morphologic Variants of Pancreatic Neuroendocrine Tumors: Clinicopathologic Analysis and Prognostic Stratification. Endocr Pathol. 2020 Sep;31(3):239-253. doi: 10.1007/s12022-020-09628-z.PMID: 32488621
	Muraki T, Reid MD, Pehlivanoglu B, Gonzalez RS, Sekhar A, Memis B, Xue Y, Cheng J, Jang KT, Mittal P, Cardona K, Kooby DA, Maithel S, Sarmiento JM, El-Rayes B, Lomberk G, Urrutia RA, Christians K, Tsai S, Evans DB, Adsay V. Variant anatomy of the biliary system as a cause of pancreatic and peri-ampullary cancers.  HPB (Oxford). 2020 Dec;22(12):1675-1685. doi: 10.1016/j.hpb.2020.03.014. Epub 2020 Apr 24.PMID: 32336556

Kiyga , E.  Sengelen , A.  Adiguzel , Z.  Ucar, EO. Investigation of the role of quercetin as a heat shock protein inhibitor on apoptosis in human breast cancer cells.  Mol Biol Rep. 2020 Jul;47(7):4957-4967

Saygideger Y, Ozturk AB, Demir C, Iliaz S and Bayram H. Biomarkers in pulmonary research. EC Pulmonol Respir Med 2020; SI.03: 21-30.

Yurtseven E.; Ural D.; Baysal K.; Tokgözoğlu L. An Update on the Role of PCSK9 in Atherosclerosis. Journal of Atherosclerosis and Thrombosis. 2020; Volume 27 Issue 9 Pages 909-918. http://doi.org/10.5551/jat.55400.

HS Bagheri, F Bani, S Tasoglu, A Zarebkohan, R Rahbarghazi, E Sokullu. Mitochondrial donation in translational medicine; from imagination to reality. Journal of Translational Medicine, 18 (1), 1-18 (2020).

SR Dabbagh, F Rabbi, Z Doğan, AK Yetisen, S Tasoglu*. Machine learning-enabled multiplexed microfluidic sensors. Biomicrofluidics, 14 (6), 061506  (2020)

1. Ghaderinezhad, H.C. Koydemir, D. Tseng, D. Karinca, K. Liang, A. Özcan*, & S. Tasoglu*. “Sensing of electrolytes in urine using a miniaturized paper-based device”. Scientific Reports, 10 (1), 1-9 (2020).

R Amin, F Ghaderinezhad, C Bridge, M Temirel, S Jones, P Toloueinia, and S. Tasoglu*, “Pushing the Limits of Spatial Assay Resolution for Paper-Based Microfluidics Using Low-Cost and HighThroughput Pen Plotter Approach”, Micromachines, 11 (6), 611 (2020).

Aydemir D, Ulusu NN. Is glucose-6-phosphate dehydrogenase enzyme deficiency a factor in Coronavirus-19 (COVID-19) infections and deaths? Pathog Glob Health. 2020 May;114(3):109-110. doi: 10.1080/20477724.2020.1751388. Epub 2020 Apr 14. PMID: 32286926; PMCID: PMC7241485.

Dogru S, Aydemir D, Salman N, Ulusu NN, Alaca BE. Impact of PDMS surface treatment in cell-mechanics applications. J Mech Behav Biomed Mater. 2020 Mar;103:103538. doi: 10.1016/j.jmbbm.2019.103538. Epub 2019 Nov 15. PMID: 31760274.

Aydemir D, Ulusu NN. Commentary: Challenges for PhD students during COVID-19 pandemic: Turning crisis into an opportunity. Biochem Mol Biol Educ. 2020 Sep;48(5):428-429. doi: 10.1002/bmb.21351. Epub 2020 Apr 9. PMID: 32271978; PMCID: PMC7262270.

Otahal A, Aydemir D, Tomasich E, Minichsdorfer C. Delineation of cell death mechanisms induced by synergistic effects of statins and erlotinib in non-small cell lung cancer cell (NSCLC) lines. Scientific Reports (2020) 10:959. https://doi.org/10.1038/s41598-020-57707-2.

Samadi A, Ziaee M, Isikhan SY, Ulusu NN, Samadi M. Effects of treatment with haloperidol and clozapine on the plasma concentrations of thyroid hormones in rats. Endocr Regul. 2020 Apr 1;54(2):71-76. doi: 10.2478/enr-2020-0009. PMID: 32597158.

Aydemir D, Ulusu NN. Correspondence: Angiotensin-converting enzyme 2 coated nanoparticles containing respiratory masks, chewing gums and nasal filters may be used for protection against COVID-19 infection. Travel Med Infect Dis. 2020 Sep-Oct;37:101697. doi: 10.1016/j.tmaid.2020.101697. Epub 2020 Apr 23. PMID: 32335209; PMCID: PMC7195061.

Aydemir D, Ulusu NN. Influence of Lifestyle Parameters – Dietary Habit, Chronic Stress and Environmental Factors, Jobs – on the Human Health in Relation to the COVID-19 Pandemic. Disaster Med Public Health Prep. 2020 Jun;14(3):e36-e37. doi: 10.1017/dmp.2020.222. Epub 2020 Jun 25. PMID: 32580815; PMCID: PMC7387745.

Aydemir D, Simsek G, Ulusu NN. Dataset of the analyzing trace elements and minerals via ICP-MS: Method validation for the mammalian tissue and serum samples. Data Brief. 2020 Feb 3;29:105218. doi: 10.1016/j.dib.2020.105218. PMID: 32071990; PMCID: PMC7016227.

Aydemir D, Hashemkhani M, Acar HY, Ulusu NN. Evaluation of the biocompatibility of the GSH-coated Ag2S quantum dots in vitro: a perfect example for the non-toxic optical probes. Mol Biol Rep. 2020 Jun;47(6):4117-4129. doi: 10.1007/s11033-020-05522-3. Epub 2020 May 20. PMID: 32436042.

Aydemir D, Ulusu NN. Importance of the serum biochemical parameters as potential biomarkers for rapid diagnosis and evaluating preclinical stage of ALS. Med Hypotheses. 2020 Aug;141:109736. doi: 10.1016/j.mehy.2020.109736. Epub 2020 Apr 13. PMID: 32315925.

Aydemir D, Ulusu NN. The role of biotin metabolism in the COVID-19 infection. Turkish Journal of Biochemistry. Turkish Journal of Biochemistry-Turk Biyokimya Dergisi Volume: 45 Issue: 6 Pages: 671-672 DOI: 10.1515/tjb-2020-0231 DEC 2020

Aydemir D, Ulusu NN. Impact of COVID-19 pandemic on academic research and being demotivated. Anadolu Psikiyatri Dergisi-Anatolian Journal of Psychiatry Volume: 21 Issue: 6 Pages: 666-666 DEC 2020

Aydemir D, Ulusu NN. Commentary: Challenges for PhD students duringCOVID-19 pandemic: Turning crisis into an opportunity. Biochemistry and Molecular Biology Education Volume: 48 Issue: 5 Pages: 428-429 Special Issue: SI DOI: 10.1002/bmb.21351Published: SEP 2020

Aydemir D, Ulusu NN Are Angiotensin II receptor blockers for hypertension a gleam of hope or not against COVID-19 infection?” to Journal of Basic and Clinical Health Sciences Volume: 4 Issue: 3 Pages: 394-396. 2020. DOI: 10.30621/jbachs.2020.1153

Aydemir D, Ulusu NN. The possible role of the glucose-6-phosphate dehydrogenase enzyme deficiency in the polyneuropathies” has been accepted for publication in an upcoming issue of Journal of Basic and Clinical Health Sciences Volume: 4 Issue: 3 Pages: 212-217. 2020. DOI: 10.30621/jbachs.2020.1151

Aydemir D, Ulusu NN. Influence of the life style parameters including dietary habit, chronic stress and environmental factors and jobs on the human health in relation to COVID-19 pandemic. Disaster Med Public Health Prep. 2020 Jun 25:1-4. doi: 10.1017/dmp.2020.222. Online ahead of print

Aydemir D, Oztascı B, Barlas N, Ulusu NN. Influence of the butylparaben administration on the liver, kidney and spleen. Turkish Journal of Biochemistry-Turk Biyokimya Dergisi Volume: ‏ 4Issue: ‏ 6Pages: ‏ 689-694Published: ‏ DEC 2020 (TBD accepted). Doi.10.1515/tjb-2020-0048 Published online: 27 Jul 2020

Aydemir D, Gecili F, Ozdemir N, Ulusu NN. Synthesis and characterization of a triple enzyme-inorganic hybrid nanoflower (TrpE@ihNF) as a combination of three pancreatic digestive enzymes amylase, protease and lipase. Journal of Bioscience and Bioengineering Volume 129, Issue 6, June 2020, Pages 679-686 DOI: 10.1016/j.jbiosc.2020.01.008

Aydemir D, Sarayloo E, Ulusu NN. Rosiglitazone-induced changes in the oxidative stress metabolism and fatty acid composition in relation with trace element status in the primary adipocytes. J Med Biochem 39: 3, 267-275, 2020. DOI: 10.2478/jomb-2019-0041

Javaheri S, Martinez-Garcia MA, Campos-Rodriguez F, Muriel A, Peker Y. CPAP Adherence for Prevention of Major Adverse Cerebrovascular and Cardiovascular Events in Obstructive Sleep Apnea. Am J Respir Crit Care Med. 2020 Mar 1;201(5):607-610. doi: 10.1164/rccm.201908-1593LE.

Peker Y, Thunström E, Glantz H, Eulenburg C Effect of Obstructive Sleep Apnea and CPAP Treatment on Cardiovascular Outcomes in Acute Coronary Syndrome in the RICCADSA Trial. J Clin Med. 2020 Dec 15;9(12):E4051. doi: 10.3390/jcm9124051.

Balcan B, Thunström E, Yucel-Lindberg T, Lindberg K, Ay P, Peker Y**. Impact of CPAP treatment on leptin and adiponectin in adults with coronary artery disease and nonsleepy obstructive sleep apnoea in the RICCADSA trial. Sleep Med. 2020 Mar;67:7-14. doi: 10.1016/j.sleep.2019.10.016

Javaheri S, Martinez-Garcia MA, Campos-Rodriguez F, Muriel A, Peker Y. CPAP Adherence for Prevention of Major Adverse Cerebrovascular and Cardiovascular Events in Obstructive Sleep Apnea. Am J Respir Crit Care Med. 2020 Mar 1;201(5):607-610. doi: 10.1164/rccm.201908-1593LE.

Peker Y. Obstructive sleep apnoea in acute coronary syndrome. Lancet Respir Med. 2020 Apr;8(4):e14. doi: 10.1016/S2213-2600(20)30042-4. Epub 2020 Feb 5.

Strollo PJ Jr, Olafiranye O, Peker Y. Rapid Eye Movement-related Sleep-disordered Breathing and Cardiovascular Risk: Additional Clarity or More Questions? (editorial). Ann Am Thorac Soc. 2020 May;17(5):559-560. doi: 10.1513/AnnalsATS.202002-128ED.

Celik Y, Thunström E, Strollo PJ Jr, Peker Y**. Continuous positive airway pressure treatment and anxiety in adults with coronary artery disease and nonsleepy obstructive sleep apnea in the RICCADSA trial. Sleep Med. 2021 Jan;77:96-103. doi: 10.1016/j.sleep.2020.11.034. Epub 2020 Dec 4.

Yakut T, Balcan B, Karakurt S, Direskeneli H, Yalcinkaya Y, Peker Y**. Impact of concomitant obstructive sleep apnea on pulmonary involvement and main pulmonary artery diameter in adults with scleroderma. Sleep Breath. 2021 Mar;25(1):135-143. doi: 10.1007/s11325-020-02059-4. Epub 2020 Apr 13.

Le M, Malpas C, Sharmin S, Horáková D, Havrdova E, Trojano M, Izquierdo G, Eichau S, Ozakbas S, Lugaresi A, Prat A, Girard M, Duquette P, Larochelle C, Alroughani R, Bergamaschi R, Sola P, Ferraro D, Grammond P, Grand’ Maison F, Terzi M, Boz C, Hupperts R, Butzkueven H, Pucci E, Granella F, Van Pesch V, Soysal A, Yamout BI, Lechner-Scott J, Spitaleri D, Ampapa R, Turkoglu R, Iuliano G, Ramo-Tello C, Sanchez-Menoyo JL, Sidhom Y, Gouider R, Shaygannejad V, Prevost J, Altintas A, Fragoso YD, McCombe PA, Petersen T, Slee M, Barnett MH, Vucic S, Van Der Walt A, Kalincik T. Disability Outcomes of Early Cerebellar and Brainstem Symptoms in Multiple Sclerosis. Mult Scler. 2020 Jun 15:1352458520926955

Malpas CB, Manouchehrinia A, Sharmin S, Roos I, Horakova D, Havrdova EK, Trojano M, Izquierdo G, Eichau S, Bergamachi R, Sola P, Ferraro D, Lugaresi A, Prat A, Girard M, Duquette P, Grammond P, Maison FG, Ozakbas S, Van Pesch V, Granella F, Huppert D, Pucci E, Boz C, Sidhom Y, Gouider R, Spitaleri D, Soysal A, Petersen T, Verheul F, Karabudak R, Turkoglu R, Ramo-Tello C, Terzi M, Cristiano E, Slee M, McCombe P, Macdonell R, Fragoso Y, Olascoaga J, Altintas A, Olsson T, Butzkueven H, Hillert J, Kalincik T. Early clinical markers of aggressive multiple sclerosis. Brain; 2020 May 1;143(5):1400-1413.

Krysko KM, Graves JS, Dobson R, Altintas A, Amato MP, Bernard J, Bonavita S, Bove R, Cavalla P, Clerico M, Corona T, Doshi A, Fragoso Y, Jacobs D, Jokubaitis V, Landi D, Llamosa G, Longbrake EE, Maillart E, Marta M, Midaglia L, Shah S, Tintore M, van der Walt A , Voskuhl R, Wang Y, Zabad RK, Zeydan B, Houtchens M aND Hellwig K on behalf of the International Women in MS (iWiMS). Sex effects across the lifespan in women with multiple sclerosis. Ther Adv Neurol Disord 2020, Vol. 13: 1–30. DOI: 10.1177/1756286420936166

Whittam DH, Karthikeayan V, E. Gibbons E, Kneen R,  Chandratre S, Ciccarelli O, Hacohen Y, de Seze J, Deiva K, Hintzen RQ, Wildemann B, Jarius S, Kleiter I, Rostasy K,  Huppke P, Hemmer B, Paul F, Aktas O, Pröbstel AK, Arrambide G, Tintore M, Amato MP, Nosadini M, Mancardi MM, Capobianco M, Illes Z, Siva A, Altintas A, Akman‑Demir G, Pandit L, Apiwattankul M, Hor JY, Viswanathan S, Qiu W, Kim HJ, Nakashima I, Fujihara K, Ramanathan S, Dale RC, Boggild M, Broadley S, Lana‑Peixoto MA, Sato DK, Tenembaum S, Cabre P, Wingerchuk DM, Weinshenker BG, Greenberg B, Matiello M, Klawiter EC, Bennett JL, Wallach AI, Kister I, Banwell BL, Traboulsee A, Pohl D, Palace J, Leite MI, Levy M, Marignier R, Solomon T, 1Lim M, Huda S, Jacob A. Treatment of MOG antibody associated disorders: results of an international survey. Journal of Neurology

https://doi.org/10.1007/s00415-020-10026-y

Kunchok, A., Malpas, C., Nytrova, P., Havrdova, E.K., Alroughani, R., Terzi, M., Yamout, B., Hor,J.Y., Karabudak, R., Boz, C., Ozakbas, S., Olascoaga, J., Simo, M., Granella, F., Patti, F., McCombe,P., Csepany, T., Singhal, B., Bergamaschi, R., Fragoso, Y., Al-Harbi, T., Turkoglu, R., Lechner-Scott,J., Laureys, G., Oreja-Guevara, C., Pucci, E., Sola, P., Ferraro, D., Altintas, A., Soysal, A., Vucic, S., Grand’Maison, F., Izquierdo, G., Eichau, S., Lugaresi, A., Onofrj, M., Trojano, M., Marriott, M.,Butzkueven, H., Kister, I., Kalincik, T. Clinical and therapeutic predictors of disease outcomes in AQP4-IgG+ neuromyelitis optica spectrum disorder (2020) Multiple Sclerosis and Related Disorders, 38, art. no. 101868.

DOI: 10.1016/j.msard.2019.101868

Sá, M.J., Soares dos Reis, R., Altintas, A., Celius, E.G., Chien, C., Comi, G., Graus, F., Hillert, J.,Hobart, J., Khan, G., Kissani, N., Langdon, D., Leite, M.I., Okuda, D.T., Palace, J., Papais-Alvarenga,R.M., Mendes-Pinto, I., Shi, F.-D.

State of the Art and Future Challenges in Multiple Sclerosis Research and Medical Management: An Insight into the 5th International Porto Congress of Multiple Sclerosis (2020) Neurology and Therapy (article in press).DOI: 10.1007/s40120-020-00202-7

Altintas A, Dargvainiene J, Schneider-Gold C, Asgari N, Ayzenberg I, Ciplea AI, Junker R, Leypoldt F, Wandinger KP, Hellwig K. Gender issues of antibody-mediated diseases in neurology: (NMOSD/autoimmune encephalitis/MG). Ther Adv Neurol Disord. 2020 Aug 25;13:1756286420949808. doi: 10.1177/1756286420949808. PMID: 32922516; PMCID: PMC7450460.

Tutuncu M, Altintas A, Dogan BV, Uygunoglu U, Kale Icen N, Elmalı Karakaya A, Coban E, Alpaslan BG, Sosyal A. The use of Modified Rio score for determining treatment failure in patients with multiple sclerosis: retrospective descriptive case series study. Acta Neurol Belg. 2020 Aug 31. doi: 10.1007/s13760-020-01476-2. Epub ahead of print. PMID: 32865702.

Bovis F, Kalincik T, Lublin F, Cutter G, Malpas C, Horakova D, Havrdova EK, Trojano M, Prat A, Girard M, Duquette P, Onofrj M, Lugaresi A, Izquierdo G, Eichau S, Patti F, Terzi M, Grammond P, Bergamaschi R, Sola P, Ferraro D, Ozakbas S, Iuliano G, Boz C, Hupperts R, Grand’Maison F, Oreja-Guevara C, van Pesch V, Cartechini E, Petersen T, Altintas A, Soysal A, Ramo-Tello C, McCombe P, Turkoglu R, Butzkueven H, Wolinsky JS, Solaro C, Sormani MP. Treatment response score to glatiramer acetate or interferon beta-1a. Neurology. 2021 Jan 12;96(2):e214-e227. doi: 10.1212/WNL.0000000000010991. Epub 2020 Oc 6. PMID: 33024022

Le M, Malpas C, Sharmin S, Horáková D, Havrdova E, Trojano M, Izquierdo G, Eichau S, Ozakbas S, Lugaresi A, Prat A, Girard M, Duquette P, Larochelle C, Alroughani R, Bergamaschi R, Sola P, Ferraro D, Grammond P, Grand’ Maison F, Terzi M, Boz C, Hupperts R, Butzkueven H, Pucci E, Granella F, Van Pesch V, Soysal A, Yamout BI, Lechner-Scott J, Spitaleri D, Ampapa R, Turkoglu R, Iuliano G, Ramo-Tello C, Sanchez-Menoyo JL, Sidhom Y, Gouider R, Shaygannejad V, Prevost J, Altintas A, Fragoso YD, McCombe PA, Petersen T, Slee M, Barnett MH, Vucic S, Van Der Walt A, Kalincik T. Disability outcomes of early cerebellar and brainstem symptoms in multiple sclerosis. Mult Scler. 2021 Apr;27(5):755-766. doi: 10.1177/1352458520926955. Epub 2020 Jun 15.PMID: 32538713

Taşkın B, Vural S, Altuğ E, Demirkesen C, Kocatürk E, Çelebi İ, Ferhanoğlu B, Alper S. COVID-19 Presenting with Atypical Sweet’s Syndrome J Eur Acad Dermatol Venereol. 2020 Oct;34(10):e534-e535. doi: 10.1111/jdv.16662. Epub 2020 Jun 29. PMID: 32452542; PMCID: PMC7283742.

Vatansever D, İncir S, Bildik G, Taskiran C, Oktem O. In-vitro AMH production of ovarian tissue samples in culture correlates with their primordial follicle pool. Eur J Obstet Gynecol Reprod Biol. 2020 Nov;254:138-140. doi: 10.1016/j.ejogrb.2020.09.002. Epub 2020 Sep

Yildiz S, Yakin K, Ata B, Oktem O. There is a cycle to cycle variation in ovarian response and pre-hCG serum progesterone level: an analysis of 244 consecutive IVF cycles.Sci Rep. 2020 Sep 25;10(1):15793. doi: 10.1038/s41598-020-72597-0.

Bildik G, Akin N, Esmaeilian Y, Hela F, Yildiz CS, Iltumur E, İncir S, Karahuseyinoglu S, Yakin K, Oktem O. Terminal differentiation of human granulosa cells as luteinization is reversed by activin-A through silencing of Jnk pathway.Cell Death Discov. 2020 Sep 23;6(1):93. doi: 10.1038/s41420-020-00324-9. eCollection 2020

Ercin S, Ertas S, Dundar O, Oktem O, Yakin K. Anogenital distance in newborn infants conceived by assisted reproduction and natural conception.

Reprod Biomed Online. 2020 Sep;41(3):474-482. doi: 10.1016/j.rbmo.2020.04.019. Epub 2020 May.

Bildik G, Akin N, Esmaeilian Y, Hela F, Yakin K, Onder T, Urman B, Oktem O.Biol Reprod. hCG Improves Luteal Function and Promotes Progesterone Output through the Activation of JNK Pathway in the Luteal Granulosa Cells of the Stimulated IVF Cycles†. 2020 May 26;102(6):1270-1280. doi: 10.1093/biolre/ioaa034.

Bildik G, Esmaeilian Y, Vatansever D, Bilir E, Taskiran C, Oktem O. A comparative molecular analysis of DNA damage response, cell cycle progression, viability and apoptosis of malignant granulosa cells exposed to gemcitabine and cisplatin. Mol Biol Rep. 2020 May;47(5):3789-3796. doi: 10.1007/s11033-020-05426-2. Epub 2020 Apr 10.

Palvadeau R, Kaya-Güleç ZE, Şimşir G, Vural A, Öztop-Çakmak Ö, Genç G, Aygün MS, Falay O, Başak AN, Ertan S. Cerebellar cognitive-affective syndrome preceding ataxia associated with complex extrapyramidal features in a Turkish SCA48 family. Neurogenetics. 2020 Jan;21(1):51-58. doi: 10.1007/s10048-019-00595-0. Epub 2019 Nov 19. PMID: 31741143.

Winklmeier S, Schlüter M, Spadaro M, Thaler FS, Vural A, Gerhards R, Macrini C, Mader S, Kurne A, Inan B, Karabudak R, Özbay FG, Esendagli G, Hohlfeld R, Kümpfel T, Meinl E. Identification of circulating MOG-specific B cells in patients with MOG antibodies. Neurol Neuroimmunol Neuroinflamm. 2019 Oct 14;6(6):625. doi: 10.1212/NXI.0000000000000625

Stengel H, Vural A, Brunder AM, Heinius A, Appeltshauser L, Fiebig B, Giese F, Dresel C, Papagianni A, Birklein F, Weis J, Huchtemann T, Schmidt C, Körtvelyessy P, Villmann C, Meinl E, Sommer C, Leypoldt F, Doppler K. Anti-pan-neurofascin IgG3 as a marker of fulminant autoimmune neuropathy. Neurol Neuroimmunol Neuroinflamm. 2019 Aug 16;6(5). pii: e603. doi: 10.1212/NXI.0000000000000603. Print 2019 Sep.

Marti Fernandez I, Macrini C, Krumbholz M, Hensbergen PJ, Hipgrave Ederveen AL, Winklmeier S, Vural A, Kurne A, Jenne D, Kamp F, Gerdes LA, Hohlfeld R, Wuhrer M, Kümpfel T, Meinl E. The Glycosylation Site of Myelin Oligodendrocyte Glycoprotein Affects Autoantibody Recognition in a Large Proportion of Patients. Front Immunol. 2019 Jun 11;10:1189. doi: 10.3389/fimmu.2019.01189.

The effect of prenatal and postnatal caffeine exposure on pentylentetrazole induced seizures in the non-epileptic and epileptic offsprings. Yavuz M, Albayrak N, Özgür M, Gülçebi İdriz Oğlu M, Çavdar S, Onat F. Neurosci Lett.  2019 Nov 20;713:1345042019

Bay HH, Özkan M, Onat F, Çavdar S. Do the Dento-Thalamic Connections of Genetic Absence Epilepsy Rats from Strasbourg Differ from Those of Control Wistar Rats? Brain Connect. 2019 Nov;9(9):703-710.

Çavdar S, Kuvvet Y, Sur-Erdem I, Özgür M, Onat F. Relationships between astrocytes and absence epilepsy in rat: An experimental study. Neurosci Lett.  2019 Nov 20; 713:134504.

Sarker, R., Conlon, T., Morrone, C., Srivastava, B., Konyalilar, N., Verleden, S., Bayram, H., Fehrenbach, H. and Yildirim, A., 2019. CARM1 regulates senescence during airway epithelial cell injury in COPD pathogenesis. American Journal of Physiology-Lung Cellular and Molecular Physiology, 317(5), pp.L602-L614.

Aydemir D, Ulusu NN. Comment on the: Molecular mechanism of CAT and SOD activity change under MPA-CdTe quantum dots induced oxidative stress in the mouse primary hepatocytes (Spectrochim Acta A Mol Biomol Spectrosc. 2019 Sep 5; 220:117104). Spectrochim Acta A Mol Biomol Spectrosc. 2020 Mar 15;229:117792. doi: 10.1016/j.saa.2019.117792. Epub 2019 Dec 14. PMID: 31865110.

Aydemir D, Oztascı B, Barlas N, Ulusu NN. Effects of the butylparaben on the glutathione-dependent and -independent anti-oxidant enzyme metabolisms” Archives of Industrial Hygiene and Toxicology, Vol. 70 No. 4, 2019 315-324.

Aydemir D, Hashemkhani M, Acar HY, Ulusu NN. In vitro interaction of glutathione S-transferase-pi enzyme with glutathione-coated silver sulfide quantum dots: A novel method for biodetection of glutathione S-transferase enzyme. Chem Biol Drug Des. 2019 Dec;94(6):2094-2102. doi: 10.1111/cbdd.13614

Aydemir D, Karabulut G, Şimşek G, Gok M, Barlas N, Ulusu NN. Data the DEHP induced changes on the trace element and mineral levels in the brain and testis tissues of rats. Data in Brief Volume: 26, 104526, p 1-7, 2019. DOI: 10.1016/j.dib.2019.104526

Kayadibi H, Yapar D, Akdogan O, Ulusu NN, Baykam N. Title: Diagnostic utility of Hitit index to distinguish patients with and without Crimean Congo Hemorrhagic fever disease. Ticks and Tick-Borne Diseases Volume 10, Issue 5, August 2019, Pages 1035-1040.

Aydemir D, Hashemkhani M, Durmusoglu EG, Yagci Acar H, Ulusu NN. A new substrate for glutathione reductase: Glutathione coated Ag₂S quantum dots. Talanta 194, 501-506, 2019.

Ulusu NN, Gok M, Erman B, Turan B. The Effects of Timolol Treatment on Streptozotocin-Induced Diabetic Rats Pancreatic enzymes: An Experimental and Computational Study. J Med Biochem 38: 1–11, 2019.

Balcan B, Thunström E, Strollo PJ Jr, Peker Y**. Continuous Positive Airway Pressure and Depression in Adults with Coronary Artery Disease and Nonsleepy Obstructive Sleep Apnea. A Secondary Analysis of the RICCADSA Trial. Ann Am Thorac Soc 2019 Jan;16(1):62-70. doi: 10.1513/AnnalsATS.201803-174OC.

Mutlu GM, Peker Y. Air Pollution, Asthma, and Sleep Apnea. New Epidemiological Links? (editorial). Ann Am Thorac Soc 2019 Mar;16(3):307-308.

Balcan B, Thunström E, Strollo PJ Jr, Peker Y**. Determinants of depressive mood in coronary artery disease patients with obstructive sleep apnea and response to continuous positive airway pressure treatment in non-sleepy and sleepy phenotypes in the RICCADSA cohort. J Sleep Res 2019 Aug;28(4):e12818. doi: 10.1111/jsr.12818.

Balcan B, Thunström E, Yucel-Lindberg T, Lindberg K, Ay P, Peker Y**. Impact of CPAP treatment on leptin and adiponectin in adults with coronary artery disease and nonsleepy obstructive sleep apnoea in the RICCADSA trial. Sleep Med. 2019 Nov 14;67:7-14. doi: 10.1016/j.sleep.2019.10.016.

Wallström S, Balcan B, Thunström E, Wolf A, Peker Y**. CPAP and Health-Related Quality of Life in Adults with Coronary Artery Disease and Nonsleepy Obstructive Sleep Apnea in the RICCADSA Trial. J Clin Sleep Med 2019 Aug 12. pii: jc-18-00536.

Leurs CE, Twaalfhoven H, Lissenberg-Witte BI, van Pesch V, Dujmovic I, Drulovic J, Castellazzi M, Bellini T, Pugliatti M, Kuhle J, Villar LM, Alvarez-Cermeño JC, Alvarez-Lafuente R, Hegen H, Deisenhammer F, Walchhofer LM, Thouvenot E, Comabella M, Montalban X, Vécsei L, Rajda C, Galimberti D, Scarpini E, Altintas A, Rejdak K, Frederiksen JL, Pihl-Jensen G, Jensen P, Khalil M, Voortman MM, Fazekas F, Saiz A, La Puma D, Vercammen M, Vanopdenbosch L, Uitdehaag B, Killestein J, Bridel C, Teunissen C. Kappa free light chains is a valid tool in the diagnostics of MS: A large multicenter study. Mult Scler. 2019 May 8:1352458519845844. doi: 10.1177/1352458519845844. [Epub ahead of print]

Fambiatos A, Jokubaitis V, Horakova D, Kubala Havrdova E, Trojano M, Prat A, Girard M, Duquette P, Lugaresi A, Izquierdo G, Grand’Maison F, Grammond P, Sola P, Ferraro D, Alroughani R, Terzi M, Hupperts R, Boz C, Lechner-Scott J, Pucci E, Bergamaschi R, Van Pesch V, Ozakbas S, Granella F, Turkoglu R, Iuliano G, Spitaleri D, McCombe P, Solaro C, Slee M, Ampapa R, Soysal A, Petersen T, Sanchez-Menoyo JL, Verheul F, Prevost J, Sidhom Y, Van Wijmeersch B, Vucic S, Cristiano E, Saladino ML, Deri N, Barnett M, Olascoaga J, Moore F, Skibina O, Gray O, Fragoso Y, Yamout B, Shaw C, Singhal B, Shuey N, Hodgkinson S, Altintas A, Al-Harbi T, Csepany T, Taylor B, Hughes J, Jun JK, van der Walt A, Spelman T, Butzkueven H, Kalincik T. Risk of secondary progressive multiple sclerosis: A longitudinal study. Mult Scler. 2019 Aug 9:1352458519868990. doi: 10.1177/1352458519868990. [Epub ahead of print]

Cavit Boz, Murat Terzi, Bilge Özer, Recai Turkoglu, Rana Karabudak, Hüsnü Efendi, Aysun Soysal, Serhan Sevim, Ayse Altintas, Asli Kurne, Aylin Akçalı, Gülsen Akman,
Nur Yüceyar, Belgin Petek Balcı, Özgul Ekmekci, Serap Zengin Karahan, Meltem Demirkıran, Burcu Altunrende, Ömer Faruk Turan, Gökçen GözübatıkÇelik, Nilüfer Kale,Mesrure Köseoğlu, Serkan Ozakbas. Comparative analysis of fingolimod versus teriflunomide in relapsing–remitting multiple sclerosis. Multiple Sclerosis and Related Disorders 36 (2019) 101376

Zhou, Y., Claflin, S.B., Stankovich, J., van der Mei, I., Simpson, S., Roxburgh, R.H., Kalincik, T.,Blizzard, L., Lugaresi, A., Alroughani, R., Sajedi, S.A., Butzkueven, H., Pucci, E., Spitaleri, D.L.A.,Granella, F., Cristiano, E., Yamout, B., Hughes, S., Gouider, R., Sánchez Menoyo, J.L., Olascoaga,J., McGuigan, C., Shaw, C., Kermode, A.G., Kasa, K., Al-Harbi, T., Altintas, A., Laureys, G., Fragoso,Y., Hardy, T.A., Csepany, T., Sirbu, C.-A., Decoo, D., Sas, A., Alvarez-Cermeño, J.C., Kotkata, K.,Millán-Pascual, J., Taylor, B.V. Redefining the Multiple Sclerosis Severity Score (MSSS): The effect of sex and onset phenotype. Mult Scler. 2020 Nov;26(13):1765-1774. doi: 10.1177/1352458519881994. Epub 2019 Oct 31.PMID: 31668127

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Vural S, Gundogdu M, Gökpinar E; Durmaz CD, Ertop P, Ilgin HR, Ruzicka T, Giehl KA, Holdt L, Kleinhempel A, Boyvat A. Association of Pyrin mutations and Autoinflammation with Complex Phenotype Hidradenitis Suppurativa: A Case Control Study, Br J Dermatol. 2019 Jun;180(6):1459-1467. doi: 10.1111/bjd.17466. Epub 2019 Feb 20. PMID: 30488432.

Yakin K, Oktem O, Urman B. Intrauterine administration of peripheral mononuclear cells in recurrent implantation failure: a systematic review and meta-analysis. Sci Rep. 2019 Mar 7;9(1):3897. doi: 10.1038/s41598-019-40521-w

Bildik G, Akin N, Seyhan A, Esmaeilian Y, Yakin K, Keles I, Balaban B, Ata B, Urman B, Oktem O. Luteal granulosa cells from natural cycles are more capable of maintaining their viability, steroidogenic activity and LH receptor expression than those of stimulated IVF cycles.

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